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1

Introduction: Chemical Evolution and the Origins of Life

Krishnamurthy, Ramanarayanan, Hud, Nicholas V.

Journal:

Chemical Reviews

Year:

2020

File:

PDF, 1.98 MB

2020

2

History of the ribosome and the origin of translation

Petrov, Anton S., Gulen, Burak, Norris, Ashlyn M., Kovacs, Nicholas A., Bernier, Chad R., Lanier, Kathryn A., Fox, George E., Harvey, Stephen C., Wartell, Roger M., Hud, Nicholas V., Williams, Loren D

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

3

Searching for lost nucleotides of the pre-RNA World with a self-refining model of early Earth

Hud, Nicholas V.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 664 KB

english, 2018

4

DNA and RNA in Anhydrous Media: Duplex, Triplex, and G-Quadruplex Secondary Structures in a Deep Eutectic Solvent

Irena Mamajanov, Aaron E. Engelhart, Heather D. Bean, Nicholas V. Hud

Journal:

Angewandte Chemie

Year:

2010

Language:

english

File:

PDF, 871 KB

english, 2010

5

Guanine, Adenine, and Hypoxanthine Production in UV-Irradiated Formamide Solutions: Relaxation of the Requirements for Prebiotic Purine Nucleobase Formation

Hannah L. Barks , Ragan Buckley , Gregory A. Grieves, Ernesto Di Mauro, Nicholas V. Hud, Thomas M. Orlando

Journal:

Year:

2010

Language:

english

File:

PDF, 213 KB

english, 2010

6

Evidence of Novel Secondary Structure in DNA-Bound Protamine Is Revealed by Raman Spectroscopy

Hud, Nicholas V., Milanovich, Fred P., Balhorn, Rod

Journal:

Year:

1994

Language:

english

File:

PDF, 1.52 MB

english, 1994

7

Spontaneous Prebiotic Formation of a β-Ribofuranoside That Self-Assembles with a Complementary Heterocycle

Chen, Michael C., Cafferty, Brian J., Mamajanov, Irena, Gállego, Isaac, Khanam, Jaheda, Krishnamurthy, Ramanarayanan, Hud, Nicholas V.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 4.51 MB

english, 2014

8

Ammonium Ion as an NMR Probe for Monovalent Cation Coordination Sites of DNA Quadruplexes

Hud, Nicholas V., Schultze, Peter, Feigon, Juli

Journal:

Journal of the American Chemical Society

Year:

1998

Language:

english

File:

PDF, 40 KB

english, 1998

9

Glycosylation of a model proto-RNA nucleobase with non-ribose sugars: Implications for the prebiotic synthesis of nucleosides

Fialho, David, Clarke, Kimberly, Moore, Megan, Schuster, Gary, Krishnamurthy, Ramanarayanan, Hud, Nicholas

Journal:

Organic & Biomolecular Chemistry

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

10

Folding, Assembly, and Persistence: The Essential Nature and Origins of Biopolymers

Runnels, Calvin M., Lanier, Kathryn A., Williams, Justin Krish, Bowman, Jessica C., Petrov, Anton S., Hud, Nicholas V., Williams, Loren Dean

Journal:

Journal of Molecular Evolution

Year:

2018

Language:

english

File:

PDF, 3.00 MB

english, 2018

11

Spontaneous Symmetry Breaking in the Formation of Supramolecular Polymers: Implications for the Origin of Biological Homochirality

Hud, Nicholas V., Schuster, Gary, Karunakaran, Suneesh, Cafferty, Brian, Weigert-Muñoz, Angela

Journal:

Angewandte Chemie International Edition

Year:

2018

Language:

english

File:

PDF, 7.61 MB

english, 2018

12

Exquisite regulation of supramolecular equilibrium polymers in water: chain stoppers control length, polydispersity and viscoelasticity

Karunakaran, Suneesh C., Cafferty, Brian J., Peláez-Fernández, Miguel, Neselu, Kasahun, Schmidt-Krey, Ingeborg, Fernandez-Nieves, Alberto, Schuster, Gary B., Hud, Nicholas V.

Journal:

Polymer Chemistry

Year:

2018

Language:

english

File:

PDF, 5.62 MB

english, 2018

13

Prebiotic Syntheses of Noncanonical Nucleosides and Nucleotides

Fialho, David M., Roche, Tyler P., Hud, Nicholas V.

Journal:

Chemical Reviews

Year:

2020

File:

PDF, 10.40 MB

2020

14

Enzymatic Behavior by Intercalating Molecules in a Template-Directed Ligation Reaction

Swapan S. Jain, Frank A. L. Anet, Christopher J. Stahle, Nicholas V. Hud

Journal:

Angewandte Chemie

Year:

2004

Language:

english

File:

PDF, 144 KB

english, 2004

15

Titelbild: Enzymatic Behavior by Intercalating Molecules in a Template-Directed Ligation Reaction (Angew. Chem. 15/2004)

Swapan S. Jain, Frank A. L. Anet, Christopher J. Stahle, Nicholas V. Hud

Journal:

Angewandte Chemie

Year:

2004

File:

PDF, 25 KB

2004

16

Enzymatic Behavior by Intercalating Molecules in a Template-Directed Ligation Reaction

Swapan S. Jain, Frank A. L. Anet, Christopher J. Stahle, Nicholas V. Hud

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 145 KB

english, 2004

17

Cover Picture: Enzymatic Behavior by Intercalating Molecules in a Template-Directed Ligation Reaction (Angew. Chem. Int. Ed. 15/2004)

Swapan S. Jain, Frank A. L. Anet, Christopher J. Stahle, Nicholas V. Hud

Journal:

Angewandte Chemie International Edition

Year:

2004

File:

PDF, 24 KB

2004

18

DNA and RNA in Anhydrous Media: Duplex, Triplex, and G-Quadruplex Secondary Structures in a Deep Eutectic Solvent

Irena Mamajanov, Aaron E. Engelhart, Heather D. Bean, Nicholas V. Hud

Journal:

Angewandte Chemie International Edition

Year:

2010

Language:

english

File:

PDF, 906 KB

english, 2010

19

A unified model for the origin of DNA sequence-directed curvature

Nicholas V. Hud, Janez Plavec

Journal:

Year:

2003

Language:

english

File:

PDF, 340 KB

english, 2003

20

Addressing the Problems of Base Pairing and Strand Cyclization in Template-Directed Synthesis : A Case for the Utility and Necessity of ‘Molecular Midwives’ and Reversible Backbone Linkages for the Origin of proto-RNA

Nicholas V. Hud, Swapan S. Jain, Xiaohui Li, David G. Lynn

Journal:

Chemistry & Biodiversity

Year:

2007

Language:

english

File:

PDF, 450 KB

english, 2007

21

Submicromolar, Selective G-Quadruplex Ligands from One Pot: Thermodynamic and Structural Studies of Human Telomeric DNA Binding by Azacyanines

Özgül Persil Çetinkol, Aaron E. Engelhart, Rupesh K. Nanjunda, W. David Wilson, Nicholas V. Hud

Journal:

Year:

2008

Language:

english

File:

PDF, 293 KB

english, 2008

22

Cover Picture: Guanine, Adenine, and Hypoxanthine Production in UV-Irradiated Formamide Solutions: Relaxation of the Requirements for Prebiotic Purine Nucleobase Formation (ChemBioChem 9/2010)

Hannah L. Barks , Ragan Buckley , Gregory A. Grieves, Ernesto Di Mauro, Nicholas V. Hud, Thomas M. Orlando

Journal:

Year:

2010

Language:

english

File:

PDF, 957 KB

english, 2010

23

Molecular Recognition of Watson–Crick-Like Purine–Purine Base Pairs

Ragan Buckley, C. Denise Enekwa, Prof. Loren Dean Williams, Prof. Nicholas V. Hud

Journal:

Year:

2011

Language:

english

File:

PDF, 371 KB

english, 2011

24

Intercalation-Mediated Synthesis and Replication: A New Approach to the Origin of Life

NICHOLAS V HUD, FRANK A.L ANET

Journal:

Journal of Theoretical Biology

Year:

2000

Language:

english

File:

PDF, 433 KB

english, 2000

25

Tip-radius-induced artifacts in AFM images of protamine-complexed DNA fibers

Michael J. Allen, Nicholas V. Hud, Mehdi Balooch, Robert J. Tench, Wigbert J. Siekhaus, Rod Balhorn

Journal:

Ultramicroscopy

Year:

1992

Language:

english

File:

PDF, 1.18 MB

english, 1992

26

Model systems: From life's origins to a synthetic biology

V Hud Nicholas, G Lynn David

Journal:

Current Opinion in Chemical Biology

Year:

2004

Language:

english

File:

PDF, 66 KB

english, 2004

27

Characterization of nigerlysin ©, hemolysin produced by Aspergillus niger, and effect on mouse neuronal cells in vitro

Maura Donohue, Wei Wei, Jinfang Wu, Nasser H. Zawia, Nicholas Hud, Victor De Jesus, Detlef Schmechel, Justin M. Hettick, Donald H. Beezhold, Stephen Vesper

Journal:

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

28

Glyoxylate as a Backbone Linkage for a Prebiotic Ancestor of RNA

Heather D. Bean, Frank A. L. Anet, Ian R. Gould, Nicholas V. Hud

Journal:

Origins of Life and Evolution of Biospheres

Year:

2006

Language:

english

File:

PDF, 1.67 MB

english, 2006

29

Random coil conformation for extended polyglutamine stretches in aqueous soluble monomeric peptides

ERIC LEWIN ALTSCHULER, NICHOLAS V. HUD, JOSEPH A. MAZRIMAS, BERNHARD RUPP

Journal:

Chemical Biology & Drug Design

Year:

1997

Language:

english

File:

PDF, 279 KB

english, 1997

30

Nonenzymatic Ligation of DNA with a Reversible Step and a Final Linkage that Can Be Used in PCR

Dr. Aaron E. Engelhart, Brian J. Cafferty, C. Denise Okafor, Michael C. Chen, Prof. Loren Dean Williams, Prof. David G. Lynn, Prof. Nicholas V. Hud

Journal:

Year:

2012

Language:

english

File:

PDF, 426 KB

english, 2012

31

Cations in charge: magnesium ions in RNA folding and catalysis

Jessica C Bowman, Timothy K Lenz, Nicholas V Hud, Loren Dean Williams

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.77 MB

english, 2012

32

Harnessing DNA intercalation

Özgül Persil, Nicholas V. Hud

Journal:

Trends in Biotechnology

Year:

2007

Language:

english

File:

PDF, 546 KB

english, 2007

33

Gene packaging with lipids, peptides and viruses inhibits transfection by electroporation in vitro

Arlena L Coulberson, Nicholas V Hud, Joseph M LeDoux, Igor D Vilfan, Mark R Prausnitz

Journal:

Journal of Controlled Release

Year:

2003

Language:

english

File:

PDF, 383 KB

english, 2003

34

DNA–cation interactions: the major and minor grooves are flexible ionophores

Nicholas V Hud, Matjaz Polak

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 152 KB

english, 2001

35

Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex

Nicholas V Hud, Peter Schultze, Vladimı́r Sklenář, Juli Feigon

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 382 KB

english, 1999

36

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

Nicholas V Hud, Vladimir Sklenář, Juli Feigon

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 579 KB

english, 1999

37

Arginine to tryptophan substitution in the active site of a human lactate dehydrogenase variant — LDHB∗GUA1: postulated effects on subunit structure and catalysis

Gisela C. Shonnard, Nicholas V. Hud, H.W. Mohrenweiser

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

1996

Language:

english

File:

PDF, 584 KB

english, 1996

38

Structure of polyglutamine

Eric Lewin Altschuler, Nicholas V. Hud, Joseph A. Mazrimas, Bernhard Rupp

Journal:

Year:

2000

Language:

english

File:

PDF, 45 KB

english, 2000

39

The Solution Structure of d(G4T4G3)2: a Bimolecular G-quadruplex with a Novel Fold

Martin Črnugelj, Nicholas V. Hud, Janez Plavec

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 583 KB

english, 2002

40

Toroidal DNA Condensates: Unraveling the Fine Structure and the Role of Nucleation in Determining Size

Hud, Nicholas V., Vilfan, Igor D.

Journal:

Annual Review of Biophysics and Biomolecular Structure

Year:

2005

Language:

english

File:

PDF, 587 KB

english, 2005

41

Quantum-Mechanical Analysis of the Energetic Contributions to π Stacking in Nucleic Acids versus Rise, Twist, and Slide

Parker, Trent M., Hohenstein, Edward G., Parrish, Robert M., Hud, Nicholas V., Sherrill, C. David

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 493 KB

english, 2013

42

Efficient Self-Assembly in Water of Long Noncovalent Polymers by Nucleobase Analogues

Cafferty, Brian J., Gállego, Isaac, Chen, Michael C., Farley, Katherine I., Eritja, Ramon, Hud, Nicholas V.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.77 MB

english, 2013

43

Enhanced Nonenzymatic Ligation of Homopurine Miniduplexes: Support for Greater Base Stacking in a Pre-RNA World

Kuruvilla, Elizabeth, Schuster, Gary B., Hud, Nicholas V.

Journal:

Year:

2013

Language:

english

File:

PDF, 359 KB

english, 2013

44

RNA with iron(II) as a cofactor catalyses electron transfer

Hsiao, Chiaolong, Chou, I-Chun, Okafor, C. Denise, Bowman, Jessica C., O'Neill, Eric B., Athavale, Shreyas S., Petrov, Anton S., Hud, Nicholas V., Wartell, Roger M., Harvey, Stephen C., Williams, Lore

Journal:

Nature Chemistry

Year:

2013

Language:

english

File:

PDF, 349 KB

english, 2013

45

Human Telomere Sequence DNA in Water-Free and High-Viscosity Solvents: G-Quadruplex Folding Governed by Kramers Rate Theory

Lannan, Ford M., Mamajanov, Irena, Hud, Nicholas V.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.50 MB

english, 2012

46

Time Study of DNA Condensate Morphology: Implications Regarding the Nucleation, Growth, and Equilibrium Populations of Toroids and Rods †

Vilfan, Igor D., Conwell, Christine C., Sarkar, Tumpa, Hud, Nicholas V.

Journal:

Year:

2006

Language:

english

File:

PDF, 274 KB

english, 2006

47

The Origin of RNA and “My Grandfather’s Axe”

Hud, Nicholas V., Cafferty, Brian J., Krishnamurthy, Ramanarayanan, Williams, Loren Dean

Journal:

Chemistry & Biology

Year:

2013

Language:

english

File:

PDF, 859 KB

english, 2013

48

DNA-Templated Ag Nanocluster Formation

Petty, Jeffrey T., Zheng, Jie, Hud, Nicholas V., Dickson, Robert M.

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 152 KB

english, 2004

49

Solution Structure and Thermodynamics of 2′,5′ RNA Intercalation

Horowitz, Eric D., Lilavivat, Seth, Holladay, Benjamin W., Germann, Markus W., Hud, Nicholas V.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

50

Evidence That Both Kinetic and Thermodynamic Factors Govern DNA Toroid Dimensions: Effects of Magnesium(II) on DNA Condensation by Hexammine Cobalt(III) †

Conwell, Christine C., Hud, Nicholas V.

Journal:

Year:

2004

Language:

english

File:

PDF, 156 KB

english, 2004